Bioconductor https://www.bioconductor.org is a great source of R-based tools to analyze RNA-Seq and other high-throughput data. We’ll discuss some of the tools available and how to find more.
Prerequisites
The lesson, as part of the Data Carpentry workshop at Max Planck in January 2018, is aimed at graduate students and other researchers. You don’t need to have any previous knowledge of the tools that will be presented at the workshop.
| Setup | Download files required for the lesson | |
| 00:00 | 1. Introduction | What is Bioconductor and why would I use it? |
| 00:00 | 2. DESeq2: A Bioconductor Package |
How do I install and use a Bioconductor package?
How can I find which genes are differentially expressed in RNA-Seq data? |
| 00:00 | Finish |
The actual schedule may vary slightly depending on the topics and exercises chosen by the instructor.